I have a small HOB type filter that is suitable for the 2 Gal tank, not sure, but I might use that for water circulation. I'd put a very fine mesh bag or sponge over the intake to stop sucking up the zoes and run it without any filter media.
I doubt that would work. They are absolutely microscopic and would be sucked up and munched to death in a filter - even with the finest of fine mesh. No reports I read ran a filter - only an airline. Even then, I had to clamp my airline as the turbulence was just too much. It only needs a very steady light movement - barely at all.
From what I've read anyway. It's really hard to give advice when I've not successfully done it - and who's to say what didn't work for me, won't work for you either.
So it's all trial and error I think.
I would separate the female asap. Mine was only carrying eggs for a few days before I separated her and she started dropping the zoes.