Hummm, maybe playing with the light spectrum for the phyto might encourage it and discourage teh bad stuff... What lamps are you using now to grow it?
Nothing fancy. It started growing under a 100W halogen desk lamp, which is what I've kept it under. Not sure of the bulb spectrum. About the only difference between what the phyto juts are getting vs. the tank is the light angle. The lamp illuminates a massive area since it's sitting up a ways, so the phyto jugs are just receiving light angled a tad vs. straight down (I'd probably cook the phyto if it was directly under). The phyto tank has plenty of other algaes growing on the rocks & such, but that hasn't put a dent in the phyto growing.
As for other lights, I have a spare fluorescent grow light & fixture. That's grown macro for me wonderfully in the past and never caused me issues with microalgaes, but it's not all that bright and is under half the wattage of the desk lamp, so I'm not sure how well phyto would take to that if I tried it.