Well let's see. We've got several things going here. After about a month of running together, the new filter will have begun to have significant bacterial populations of its own. On the other hand, when you run multiple filters on a given amount of ammonia/tank, the bacteria will distribute evenly between all the filters. If you have two filters, the bacterial populations will move gradually toward a 50/50 split over the two filters. And on the other issue, the lid, I'm strongly in favor of always having a lid. Fish really do jump out - I've lost many, many fish that way over the years. Not only do they jump if there's no lid, they can also unfortunatly seem to find the smallest of openings and jump to their death! So minimizing those chances is a good thing to do.
Sorry no easy answers in this post but I'm sure we'll all come to some good conclusions if we keep discussing...
~~waterdrop~~