I have my nets either directly in front of the filter outlet or under it.....works brilliantly
The OP may want to save a few fry but not all, net doesnt seem silly to me......but personally i wouldnt add a molly, i would just cull the fry i didnt want myself.
By the way the 1st vid that showed the sick fish, that looked like a 'shimmies' to me, always fatal. They stop eating, waste away and swim with the shimmy motion