SH, he has the hydorflo on the stock pump in the 1st chamber, the locline split is for the MJ1200 in the 3rd chamber. (I think I read that right)... I think he is questioning which pump to leave more than the return... at least that is what I got out of his question.
I would leave the stockpump with the hydor flow on it. It's more random. However, if you can temporarily leave the hydor in place of one of the duckbills that would be better.... but your temps will be higher still as you're using the most heat generating pump of the 2 you have currently.
Either way if you could even stablilize your temps to 85 and leave it there w/out fluctuation, then that would be best to do until you get your new pump in. As 85 degrees consistently is better than 4 degree fluctuations.
HTH,
TrekBear