I'd like to offer a few comments here, as it is related to the original question in this thread, but have no objection to continuing this discussion elsewhere if others wish. I did extensive research into the topic of bacteria in freshwater aquaria a couple of years ago for an article elsewhere, so what follows is simply copied verbatim from my article; it will thus have some background obvious to most of us, but useful for a more complete discussion. I will also add the reference works [square bracket numbers] pertinent to this excerpt. To the OP's initial question, I still feel it unwise to continue the ammonia in his/her absence, for reasons which should be evident in this excerpt, but feel free to question further.
Nitrifying Bacteria
Nitrification is the oxidation of ammonia/ammonium to nitrite and then the subsequent oxidation of nitrite to nitrate; this is performed by two groups of bacteria known collectively as nitrifying bacteria or nitrifiers. True nitrifying bacteria are autotrophs; they use chemosynthesis to manufacture their energy by using oxygen plus nitrogenous waste (ammonia or nitrite) and carbon (from CO2). There are several different bacterium species involved, all in the family Nitrobacteraceae, that carry out this function in soil, and it used to be thought that these, particularly Nitrosomonas europa and Nitrobacter, were the nitrification bacteria in freshwater. But Dr. Timothy Hovanec led the team of scientists that proved this to be a mistaken assumption. Ammonia is converted to nitrite by bacteria of the Nitrosonomas marina-like strain [2] and nitrite is converted to nitrate by bacteria closely related to Nitrospira moscoviensis and Nitrospira marina. [3] With several subsequent scientific studies by other scientists on wastewater nitrifying bacteria this data is now accepted and confirmed scientific fact.
Once established, the population of these bacteria in an aquarium will be in direct proportion to the amount of ammonia or nitrite respectively. Nitrifying bacteria require 12-32 hours to multiply, which they do by binary division [each bacterium divides into two bacteria]. Nitrosomonas multiply in less time (12+ hours) while Nitrospira require more time (up to 32 hours). In a new aquarium, it can take up to eight weeks for the bacteria populations to reach a level capable of eliminating ammonia and nitrite.
Scientific studies have also now proven that Nitrospira are inhibited and cannot multiply in water that contains significant concentrations of ammonia, and evidence exists to suggest that existing populations of Nitrospira actually become dormant when ammonia is present in high concentrations. Kim et al. (2006) determined that with an active ammonia [NH3] level of 0.7 mg/l (=ppm) Nitrospira bacteria experienced a decrease of 50% effectiveness, resulting in an accumulation of nitrite. [4]
The pH has a direct effect on nitrifying bacteria. These bacteria operate at close to 100% effectiveness at a pH of 8.3, and this level of efficiency decreases as the pH lowers. At pH 7.0 efficiency is only 50%, at 6.5 only 30%, and at 6.0 only 10%. Below 6.0 the bacteria enter a state of dormancy and cease functioning. [5] Fortunately, in acidic water (pH below 7.0) ammonia automatically ionizes into ammonium which is basically harmless. And since nitrite will not be produced when the ammonia-oxidizing bacteria are in “hibernation,” this decrease in their effectiveness poses no immediate danger to the fish and other life forms.
Temperature also affects the rate of growth of nitrifying bacteria. It will be optimal at a temperature between 25 and 30C/77 and 86F. At a temperature of 18C/64F it will be 50%. Above 35C/95F the bacteria has extreme difficulty. At both 0C/32F (freezing) and 100C/212F (boiling) the bacteria die.
These bacteria cannot survive drying out; without water, they die. Tap water with chlorine or chloramine will kill these bacteria. Antibacterial medications will negatively impact the nitrifying bacteria to varying degrees.
[2] Paul C. Burrell, Carol M. Phalen, and Timothy A. Hovanec, “Identification of Bacteria Responsible for Ammonia Oxidation in Freshwater Aquaria,” Applied and Environmental Microbiology, December 2001, pp. 5791-5800.
[3] Hovanec, T. A., L. T. Taylor, A. Blakis and E. F. DeLong, “Nitrospira- Like Bacteria Associated with Nitrite Oxidation in Freshwater Aquaria,” Applied and Environmental Microbiology, Vol. 64, No. 1, pp. 258-264.
[4] Kim, D.J., D.I. Lee and J. Keller (2006), “Effect of temperature and free ammonia on nitrification and nitrite accumulation in landfill leachate and analysis of its nitrifying bacterial community by FISH,” Bioresource Technology 97(3), pp. 459-468.
[5] Kmuda, “Aquarium Bacteria and Filtration Manifesto,” Parts 1 and 2, OscarFish website.