Sounds about right. There are ~35 grammes of salt per litre of seawater, which is an SG of ~1.024. Or, about 1.46 grammes of salt per 0.001 on the SG scale. The little program does these calculations depending on which slider you drag and how far, so there is a bit of variation. For brackish water fish, an error of 10 or 20% won't make any difference at all. Either way, the result is an estimate; you'll still need to use a hydrometer to confirm.
OK. If you need 3 grammes of salt per litre, and you have a 9 litre bucket, that's 9x3=27 grammes per bucket of water. Empty the tank by 25-50% and add the new water. Yes, when you do it next time, you will "waste" some salt, but this is the easiest way to raise the salinity.
The alternative, if you know the volume of the aquarium, is to add a more concentrated salt solution gradually over a couple of hours. Say you have a 100 litre aquarium, 100x3=300 so you would need to add 300 grammes of salt. You could dissolve this amount in your bucket of water quite easily (normal seawater has 35 grammes per litre, or 315 grammes per 9 litres). This concentration will probably take a good 20 minutes to dissolve, and if in doubt, leave it for longer, either for an hour with an airstone bubbling, over overnight just sitting there.
Once you're done, remove a bucketful of water, and then add the concentrated salt solution (in fact, almost normal seawater) about a litre at a time, making sure it mixes well (i.e., pour it into the tank by the filter, so it is "squirted" across the aquarium nicely). Wait 10-20 minutes, and then add another litre of the nearly-seawater. As you add the water, keep testing the SG using your refractometer or hydrometer to see how things are going. Keep an eye on your fish. If you have brackish water species, they will be looking decidely "perky" at the first taste of salt water!
Not sure why the FAQ link in the program doesn't work, it does for me. Admittedly, it goes to a redirect page, but still, it should work. If not, go here:
http/homepage.mac.com/nmonks/aquaria/brackfaqpart1.html
Cheers,
Neale
Looks like i need 3g per L to make .002.
If i am trying to raise the tank by .002 how do i work it out? If i have a bucket that has 9L and i add 3g per L to bring this bucket to .002 then when i add this to my tank it will dilute. This is not too much of a problem, but when i do water change i am going to need to add more salt (more than 3g per L) as i would have taken some out.
(oh, BTW the link to the FAQ's in the program is down)