Well, although I don't have written articles to bolster, Anthony Calfo, Eric Borneman, and Dr Sanjay Joshi all told me that doing 100% waterchanges is both perfectly acceptable and in fact even desireable if a significant nutrient or toxin problem exists within the aquarium. They cautioned that the water should be fully aerated and mixed for 24 hours and that the salinity and temperature should match that of the old water. The article linked above cites caution in doing a 50% change due to temperature and salinity differences... Of course, if you ensure the two are the same, there's no reason not to do 100% changes.