Hi there-
Brown algae (which is rust colored) is normaly found in newly established tanks and sometimes is mature ones.
Its not really algae but diatoms and are caused by a few things.
1) not enough light or too much light
2) excessive amounts of nitrates
3) Overfeeding
I have this problem in my 20 gallon right now, because I was only leaving the light on for about 3 hours a day. Since it started appearing I leave the lights on for about 10 hours and it is starting to disappear.
It sure is ugly but it is not harmful to your fish, just kinda acts like a notification system that something is a little off in your tank.
Good Luck!