Dude..as someone who's worked at a fish shop...keeping them in jars is not that big a deal. When people on this forum breed their bettas, what do you think they keep them in? Do they go out and buy gallon bowls for each and every one of the 100 bettas they spawn? Nope. If the jars weren't clean or the bettas were sick and unmedicated, that'd be one thing.
As for bettas living in potholes and such. Yes...yes they do. They don't *just* live in rice paddies. They live in any puddle they can find. They don't go "* flop*flop*splash* Ok...is this a rice paddy? No? Its a pothole!? Well I'm not living here!" If there is the slightest bit of water, thats where they live. Keeping a betta in a small jar long term is horrible, but from my experience, the bettas you see at the lfs aren't there for very long.
Dude, I hate being the bubble burster. *cries*