It should be OK. But I would want to make sure when your do that it is not creating ammonia. Do a fishless cycle only. When you set up the new tank, let it run for a day or two without adding any ammonia. The test the water for ammonia, that will let you know if the substrate is creating this. If it is comsider the ammonia level from that as part of the total ammonia dose one would normally do in a fishless cycle.
3 ppm is enough ammonia and it should not be above 5 ppm. If it is water changes will be needed to get the ammonia down to 3 ppm or less for doing a fishless cycle. if you are going to do a planted tank. I would plant the tank first and give the plants a bit of time to settle in. They will use ammonia soon after they do.
Cycling with plants change things because they handle some to almost all of the ammonia cretaed in an established tank. However, too much ammonia can harm plants.