Some bugs can use (eat) urea as a nitrogen scource at pH between 4 and 7.5 but not utilise ammonium as a nitrogen scource. This is because urea diffuses into the bugs regardless of the pH of the liquid in which the bugs are grown whereas ammonium needs to be actively uptaken and the bugs do not have the machinery to actively uptake ammonium. This explains how soil can become nitrified (ie nitrogen enriched) when the pH of the soil is below 7.5.
Hows that?