Superglue is an acrylic based product, however, it doesnt form strong bonds with acrylic(at least not that I know of). Superglue is a type of acrylic resin that forms strong bonds when exposed to moisture. You can use it, but you will get discoloring in the plastic, so its up to you. If you are going to get another sheet to patch up the crack with, I would use weldon #3. If you just want to put something over it that will fill and fix the leak, I would go with weldon #40, but this is a 2 part mixture so its kinda harder to do, but it is worth the trouble.
Edit: Oh yeah, since its gonna need to be water tight, I wouldnt use super glue if I were you. Your decision though
If you suspect the seams to be leaking, go with weldon #40, the mixture is 100 parts to 5 parts of catalyst I believe.