Green spot puffers, like many euryhaline fishes, do much better in a reef tank than in freshwater or even brackish, due to the large amounts of 'pods and algae they can eat. In my experience, they will become very colourful and quickly shed any of the fungi, bacteria and parasites they picked up in freshwater.
It is best to acclimate these fish to full salt over a period of about an hour. This will simulate the fish moving "down the river". To do this, take a bowl that can hold the fish and the water it came in, dump him and the water in, the remove about 10-20% of the water and replace it with salty. Repeat this every ten minutes or so. I have used this to successfully acclimate several euryhaline fish, including two green spot puffers.